The only issue you could have is the cat. It is illegal under federal law to swap out a working cat with under 80K miles on it.
http://www.catalyticconverter.org/law/index.htm About modding:
Vehicle owners are protected by federal law: the Magnuson-Moss Warranty- Federal Trade Commission Improvement Act of 1975.
Under this act, aftermarket equipment (which usually improves performance) does not void a vehicles manufacturers warranty. The only exception to this act is if the the warranty clearly and conspicously states that that the aftermarket equipment voids the warranty. Most states have warranty statues, as well. These provide more protection for the owners.
A dealership/service department most prove –not just say- the aftermarket equipment caused the need for the repair before they can deny warranty coverage on that basis.
_________________________
03 GT, STB, GM HD sway bars, 35% tint, GE893(37watt)fogs, Flowtech Terminators, 180 T-stat, ZZP DP & PCM, Ceramic PLOG & Crossover, 18" glasspack, 2007 17" Mustang Bullits 235/55/17 Pirelli PZero Nero, 12" R1 D\S rotors, gutted air box, GTP radiator