I have mine setup like that except for my L36 MAP sensor is tied into the line that sees boost because it was giving a high input code when tapped into the line coming off the TB. After I switched it, the MAP kPa readings were normal.
My setup is like this:
Boost/Vac line goes from the LIM -> FPR -> MAP sensor -> Transmission
There is a vacuum only line that comes off the TB and is setup just like it was before the swap.
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'97 SE with alot of mods